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Comment: Updating for 9.5, primarily with information on layout presets and the ability to pop panels out into floating windows

The Graphical User Interface (GUI) of Aivia is shown below:

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The GUI is split into four sections:

  • Image Panel
  • Contents Panel
  • Display Settings
  • Analysis Panel
Each section offers

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Image Panel

The Image Panel is the primary area for displaying the field of view (FOV) of the image and objects contained within the image. The Image Panel provides zoom control buttons for manipulating the display of the FOV in the zoombar. You can adjust the appearance of the displayed image and objects using the Display Settings panels to the right of the image. There are five modes of display that can be accessed via the zoombar:

  • 2D view shows the displayed image in 2D; for multi-dimensional images, you can navigate to a different time point (T) or plane (Z) using the T/Z bar below the image
  • Gallery view allows you to examine individual 2D objects in a thumbnail gallery
  • 3D view shows the displayed image in 3D; this option is only available when there is more than one Z-plane on the image
  • 3D plane view shows an XY-, YZ-, and XZ

    Each section of the Aivia GUI contains different tools and functionalities for visualization, analysis, and editing.

    Panel

    On this page:

    Table of Contents

    The three (3) main sections are the following:

    • Image Panel
    • Contents Panel
    • Analysis and Display Panels

    The organization of the five (5) different panels in the Analysis and Display Panels section is highly customizable; you may pin and unpin panels, hide and show panels, change panel sizes, and pop panels out into floating windows. The Contents Panel can also be collapsed to increase the image viewing area, and GUI layouts can be saved for future use.

    Along the top of the GUI is a search bar. You can run analysis commands, navigate to tools, find YouTube tutorials, and more with Aivia's search bar.



    Panel

    On this page:

    Table of Contents


    Image Panel

    The Image Panel is the primary area for displaying the field of view (FOV) of the image and objects contained within the image. The Image Panel provides zoom control buttons for manipulating the display of the FOV in the zoombar. There are six (6) modes of display that can be accessed via the zoombar:

    • Main View (2D View) shows the displayed image in 2D; for multi-dimensional images, you can navigate to a different time point (t-frame) or plane (z-frame) using the T and/or Z bar(s) below the image.
    • Gallery View allows you to examine individual 2D objects in a thumbnail gallery.
    • 3D View shows the displayed image in 3D; this option is only available when there is more than one z-plane on the image.
    • 3D Plane View shows an xy-, yz-, and xz-plane of the image as well as a 3D view simultaneously; this option is only available when there is more than one
    Z
    • z-plane on the image.
    • VR
    view 
    • View shows the displayed image in Virtual Reality (VR) space; while this mode is active, you will not be able to interact with the displayed image in the Image Panel.
    • Classifier
    view
    • View lets you create and apply custom classification
    on
    • to analyzed data (
    such as
    • objects
    and surfaces
    • ).

    You can interact with the image directly by moving your mouse cursor to the image and using the mouse to manipulate the display. For more information, please refer to the document on mouse interactions.


    Contents Panel

    The Contents Panel consists of several major features for displaying contents, editing

    and video export

    analysis data, and exporting videos. It can be resized vertically by dragging the blue dotted handle near the top middle of the panel

    ,

    or collapsed/expanded by clicking once on the same handle

    . Some features are unavailable in different view modes

    . Alternately, you can open the panel by clicking on the button for a specific tool to open that particular featureSome features are unavailable in different view modes.

    There are six (6) tools

    for

    in the Contents Panel:

    • The Image
    explorer
    • Explorer displays thumbnails of the images you have loaded into Aivia and lets you switch between the loaded files
    • The Annotations tool provides a set of on-screen tools for manually measuring the displayed image in
    2D viewOutline editor
    outline
    • outlines of select objects
    in 2D viewTrack editor
    • in Main View (2D View).
    • The Track Editor lets you edit track objects, modifying the
    relationship
    • relationships between tracks and track points over time.
    • The Spreadsheet displays the measurement data for
    recipe-generated or manually-created
    • objects and object sets.
    • The Video
    animator
    • Animator lets you create and export flythrough videos in 3D
    view
    • View by capturing individual keyframes containing information about the current display.


    Analysis and Display

    SettingsThe Display Settings panels control

    Panels

    The primary tools for controlling the display

    for

    of channels, objects, and other display overlays on the image

    . By default, the three Display Settings panels are not pinned and are in a column to the right of the image. You can adjust how the loaded image

    are found in the following display settings panels:

    • The Channel Settings panel lets you adjust the visibility, contrast, brightness, color, and rendering mode of the channels on the loaded image.
    • The Object Set Settings panel lets you adjust the visibility, color, and display style of objects and tracks on the loaded image.
    • The 3D Display Options panel lets you control how the 3D scene appears in the Image Panel
    using the options provided in this section - operations such as visibility, contrast and rendering mode.

    There are three Display Settings panels:

    • Channel settings lets you adjust the visibility, contrast, brightness, color and rendering mode of the channels on the loaded image
    • Object set settings lets you adjust the visibility, color and display style of objects and tracks on the loaded image
    • 3D Display Options lets you control how the 3D scene appears in the Image Panel; this panel includes a section for clipping planes and ortho planes
      • Clipping & Ortho Planes lets you add clipping planes or ortho slices to the 3D display to hide parts of the rendered volume or objects

    Analysis Panel

    The Analysis Panel consists of several tools for analyzing the displayed image - automatically via recipes or manually through editing. By default, the Analysis Panel is pinned and makes up the far-right column of the Aivia window. Depending on the view mode
    • ; this panel includes a section for clipping planes and ortho planes.
      • The Clipping & Ortho Planes section lets you add clipping planes or ortho slices to the 3D display to hide parts of the rendered volume or objects.
    • The Tags panel lets you create, edit, and adjust the visibility of tags, which are customizable labels with notes for locations of interest in the image.

    The (Pre-version 12) Analysis Panel consists of several tools for analyzing the displayed image—automatically via recipes or manually through editing. Depending on the view mode, different tools may be available.

    There are five (5) tools

    for

    within the Analysis Panel:

    console
    default displayed tool that
    • tool displayed by default; the Recipe Console allows you to select and apply an automated image processing and analysis pipeline (called a "
    recipes
    • recipe") to
    run on
    • an image.
    • The Image
    enhancement tool 
    • Enhancement Tool allows you to select and run an image processing pipeline to enhance an image.
    • The Charts
     lets
    •  tab lets you plot
    the
    • analysis results graphically with a variety of display options.
    • The Pixel
    classifier
    • Classifier lets you enhance an image using DRVISION's patented machine learning technology for content-aware enhancement of image features.
    • The 3D 
    toolsprovides
    • include a suite of functions for
    manual
    • manually editing and generating analysis results as well as manipulating the display in 3D
    view
    • View.


    Panel viewing controls

    You may resize

    panels

    the Image Panel, Contents Panel, and any of the Analysis and Display Panels using the blue dotted handles. Click on the blue dotted handles that have blue arrows to hide/reveal panels.

    You can also hide panels by holding down Shift while mousing over a boundary between the Image Panel and another panel.

    The Display Settings panels and Analysis Panel each have an icon near the upper-right corner that indicates whether the panel is pinned Image Removed or unpinned Image Removed; click on this Pin icon to (un)pin the panel. If a panel is not pinned, click on the Maximize icon Image Removed in the upper-right corner of the panel to fully expand the panel. You may also click on the caret next to the header of an unpinned panel to expand/collapse the panel.

    Additionally, there is a set of controls located above the leftmost of the Display Settings panels and Analysis Panel. The figure below describes these options. You may middle-click on any of the expand/collapse icons for individual panels to maximize those panels. The expand/collapse icons for pinned panels are grayed out, and the expand/collapse icons for expanded panels are outlined in blue. 

    Image Removed

    Panel control bar

     

    The Analysis and Display Panels can be hidden and shown, collapsed and expanded, pinned and unpinned, and docked and popped out into floating windows with the global panel controls as well as controls found in the header of each panel.

    Global panel controls

    The global panel controls are found at the top of the Analysis and Display Panels section when panels are docked and along the right side of the Aivia window when all panels are in floating windows or not selected for display.

    Image Added

    Image Added

    Global panel controls with docked panelsGlobal panel controls with all floating panels and/or panels that are not displayed


    A description of each global panel control is given in the table below.

    NameIconDescription
    Expand/Collapse All Panels

    Image Added/Image Added

    Expands/Collapses all panels that are not pinned
    Unpin All Panels

    Image Added

    Unpin all panels so that they appear in a single column in the main Aivia window and/or floating Aivia Controls window(s)
    Dock All Floating Panels

    Image Added

    Dock all panels in floating windows to the main Aivia window
    Pop Out All Panels to Floating Windows

    Image Added

    Pop all panels in the main Aivia window to floating Aivia Controls windows
    Expand/Collapse/Maximize Channel Settings

    Image Added

    Expands/Collapses (when left-clicked) and maximizes (when middle-clicked) the Channel Settings panel; the icon is outlined in blue when the Channel Settings panel is expanded and is grayed out when the Channel Settings panel is pinned or in a floating window
    Expand/Collapse/Maximize Object Set Settings

    Image Added

    Expands/Collapses (when left-clicked) and maximizes (when middle-clicked) the Object Set Settings panel; the icon is outlined in blue when the Object Set Settings panel is expanded and is grayed out when the Object Set Settings panel is pinned or in a floating window
    Expand/Collapse/Maximize 3D Display Options

    Image Added

    Expands/Collapses (when left-clicked) and maximizes (when middle-clicked) the 3D Display Options panel; the icon is outlined in blue when the 3D Display Options panel is expanded and is grayed out when the 3D Display Options panel is pinned or in a floating window
    Expand/Collapse/Maximize Tags Panel

    Image Added

    Expands/Collapses (when left-clicked) and maximizes (when middle-clicked) the Tags panel; the icon is outlined in blue when the Tags panel is expanded and is grayed out when the Tags panel is pinned or in a floating window
    Expand/Collapse/Maximize Analysis Tools

    Image Added

    Expands/Collapses (when left-clicked) and maximizes (when middle-clicked) the Analysis Tools panel; the icon is outlined in blue when the Analysis Tools panel is expanded and is grayed out when the Analysis Tools panel is pinned or in a floating window
    Open Advanced GUI Options

    Image Added

    Opens a menu where you can save and load your preferred GUI layouts as well as toggle on and off the display of each Analysis and Display Panel

    Saving and restoring layouts

    Your preferred layouts of the Aivia GUI can be saved and restored as layout presets. Click on the Open Advanced GUI Options icon to open a menu where you can save, restore, rename, and remove layout presets (see diagram below). 

    Image Added

    Layout preset options

    Toggling panel display

    To remove or restore the display of any Analysis and Display Panel, click on the Open Advanced GUI Options icon and then on the name of the panel you wish to hide or show in the Displayed Items column. Panels that are displayed are outlined in blue in the Displayed Items column.

    Panel header controls

    The panel header controls for each panel are found in the same box as the panel name (see figure below). The panel header controls apply only to the associated panel.

    Image Added

    Panel headers

    Each option in the panel header is described in the table below. Some options are not available in certain layouts.

    NameIconDescription
    Expand/Collapse Panel

    Image Added/Image Added

    Expands/Collapses the panel; when a panel is collapsed, the panel header is all that is shown of the panel
    Pin/Unpin Panel

    Image Added/Image Added

    Pins/Unpins the panel; pinning a panel gives the panel its own column to the right of any unpinned panels
    Pop Out Panel to Floating Window

    Image Added

    Pops the panel out into a floating Aivia Controls window
    Maximize Panel

    Image Added

    Maximizes the panel, collapsing all other panels in the same column

    Docking and undocking panels by drag and drop

    Image Added

    Docking a panel to the main Aivia window by drag and drop

    You can left-click and drag a panel header away from the main Aivia window or a floating Aivia Controls window and then drop the panel to move it to its own floating window. To dock a panel, you can left-click and drag the panel header to the Analysis and Display Panels region in the main Aivia window or to a floating Aivia Controls window, wait until the region turns blue and the docking icon appears, and then drop the panel to dock it in that location (see example above). You can dock all panels in a floating window by dragging the header of the Aivia Controls window. You can also return all panels in an Aivia Controls window to the main Aivia window by clicking on the 'X' in the upper-right corner of the Aivia Controls window.



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